STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR65507.1Rhamnogalacturonan acetylesterase. (246 aa)    
Predicted Functional Partners:
EPR66264.1
COG3866 Pectate lyase.
 
  
  0.781
EPR65213.1
Putative alpha-L-rhamnosidase; Belongs to the glycosyl hydrolase 2 family.
 
  0.701
EPR71474.1
Putative protein-signal peptide and transmembrane prediction.
  
  0.694
EPR70939.1
Hypothetical protein.
  
  
  0.610
EPR66751.1
Secreted pectate lyase.
  
    0.592
EPR71113.1
Hypothetical protein.
  
     0.547
EPR65506.1
Protein secretion chaperonin CsaA.
       0.543
EPR69537.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.518
EPR71042.1
Putative unsaturated glucuronyl hydrolase.
  
  
  0.512
EPR66261.1
Sialidase.
 
   
  0.476
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.