STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR65608.1Deacetylase. (300 aa)    
Predicted Functional Partners:
EPR70973.1
RNA polymerase associated protein RapA.
    
 0.974
EPR68728.1
High-affnity carbon uptake protein Hat/HatR.
  
 
 0.966
EPR68729.1
WD-40 repeat protein.
    
 0.961
EPR68933.1
Hypothetical protein.
    
 0.931
EPR65744.1
Helicase, SNF2/RAD54 family.
    
 0.931
EPR71521.1
Chaperone protein HtpG.
    
 0.907
EPR70851.1
Hypothetical protein.
    
 0.907
EPR71544.1
Cell division protein FtsH.
   
 0.882
EPR71545.1
Cell division protein FtsH.
   
 0.882
EPR71056.1
Hypothetical protein.
   
 0.882
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.