STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR65340.1RuBisCO operon transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
EPR65339.1
Hypothetical protein.
 
     0.849
EPR65336.1
Putative transmembrane protein; Belongs to the UPF0753 family.
 
     0.829
EPR65337.1
NADH dehydrogenase subunit 5.
 
   
 0.792
EPR65217.1
Spermidine/putrescine transport ATP-binding protein potA; Belongs to the ABC transporter superfamily.
  
 
 0.610
EPR65338.1
Hypothetical protein.
       0.476
EPR70520.1
RND efflux membrane fusion protein.
  
     0.438
EPR67720.1
Transcriptional regulator.
  
  
 0.401
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.