STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR66598.1Hypothetical protein. (459 aa)    
Predicted Functional Partners:
EPR66593.1
Putative protein-signal peptide prediction.
     0.773
EPR65543.1
Hypothetical protein.
  
     0.768
EPR67283.1
Hypothetical protein.
  
     0.766
EPR65540.1
Hypothetical protein.
  
     0.763
EPR65542.1
Hypothetical protein.
  
     0.763
EPR65541.1
Hypothetical protein.
  
     0.760
EPR65549.1
Hypothetical protein.
  
  
  0.757
EPR66579.1
Alkaline ceramidase domain protein.
  
  
  0.752
EPR66580.1
Alkaline ceramidase domain protein.
  
  
  0.751
EPR68568.1
Alkaline ceramidase domain protein.
  
  
  0.750
Your Current Organism:
Cyclobacterium qasimii
NCBI taxonomy Id: 641524
Other names: C. qasimii M12-11B, Cyclobacterium qasimii M12-11B, Cyclobacterium sp. M12-11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.