STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPR70010.1Carotenoid cis-trans isomerase. (514 aa)    
Predicted Functional Partners:
EPR70011.1
Membrane protein, inferred for ABFAE pathway; Overlaps another CDS with the same product name.
 
  
 0.962
EPR70012.1
Membrane protein, inferred for ABFAE pathway; Overlaps another CDS with the same product name.
 
  
 0.962
EPR70009.1
Hypothetical protein.
 
     0.883
EPR70015.1
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ.
 
     0.860
EPR70014.1
Glycosyl transferase, family 2.
 
  
  0.853
EPR70008.1
Phenylacetate-coenzyme A ligase; Coenzyme F390 synthetase.
 
     0.847
EPR70018.1
Outer membrane lipoprotein carrier protein LolA.
 
     0.839
EPR70032.1
FAD-binding protein.
 
 
 0.838
EPR70017.1
Hypothetical protein.
 
     0.836
EPR70020.1
3-oxoacyl-[acyl-carrier protein] reductase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.822
Your Current Organism:
Winogradskyella psychrotolerans
NCBI taxonomy Id: 641526
Other names: W. psychrotolerans RS-3, Winogradskyella psychrotolerans RS-3, Winogradskyella sp. RS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.