Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_002104455_00076 | GCA_002104455_00078 | GCA_002104455_00076 | GCA_002104455_00078 | Unannotated protein. | Unannotated protein. | 0.573 |
GCA_002104455_00076 | GCA_002104455_00079 | GCA_002104455_00076 | GCA_002104455_00079 | Unannotated protein. | Unannotated protein. | 0.570 |
GCA_002104455_00078 | GCA_002104455_00076 | GCA_002104455_00078 | GCA_002104455_00076 | Unannotated protein. | Unannotated protein. | 0.573 |
GCA_002104455_00078 | GCA_002104455_00079 | GCA_002104455_00078 | GCA_002104455_00079 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_002104455_00078 | GCA_002104455_02852 | GCA_002104455_00078 | GCA_002104455_02852 | Unannotated protein. | Unannotated protein. | 0.998 |
GCA_002104455_00078 | GCA_002104455_02859 | GCA_002104455_00078 | GCA_002104455_02859 | Unannotated protein. | Unannotated protein. | 0.580 |
GCA_002104455_00078 | bamA | GCA_002104455_00078 | GCA_002104455_02750 | Unannotated protein. | Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.493 |
GCA_002104455_00078 | lptC | GCA_002104455_00078 | GCA_002104455_02854 | Unannotated protein. | Unannotated protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.963 |
GCA_002104455_00078 | lptD | GCA_002104455_00078 | GCA_002104455_01644 | Unannotated protein. | Unannotated protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.858 |
GCA_002104455_00078 | lpxH | GCA_002104455_00078 | GCA_002104455_00435 | Unannotated protein. | Unannotated protein; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.423 |
GCA_002104455_00079 | GCA_002104455_00076 | GCA_002104455_00079 | GCA_002104455_00076 | Unannotated protein. | Unannotated protein. | 0.570 |
GCA_002104455_00079 | GCA_002104455_00078 | GCA_002104455_00079 | GCA_002104455_00078 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_002104455_00079 | GCA_002104455_02852 | GCA_002104455_00079 | GCA_002104455_02852 | Unannotated protein. | Unannotated protein. | 0.998 |
GCA_002104455_00079 | GCA_002104455_02859 | GCA_002104455_00079 | GCA_002104455_02859 | Unannotated protein. | Unannotated protein. | 0.567 |
GCA_002104455_00079 | GCA_002104455_02876 | GCA_002104455_00079 | GCA_002104455_02876 | Unannotated protein. | Unannotated protein. | 0.506 |
GCA_002104455_00079 | bamA | GCA_002104455_00079 | GCA_002104455_02750 | Unannotated protein. | Unannotated protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.585 |
GCA_002104455_00079 | lptC | GCA_002104455_00079 | GCA_002104455_02854 | Unannotated protein. | Unannotated protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.967 |
GCA_002104455_00079 | lptD | GCA_002104455_00079 | GCA_002104455_01644 | Unannotated protein. | Unannotated protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.828 |
GCA_002104455_00079 | lpxH | GCA_002104455_00079 | GCA_002104455_00435 | Unannotated protein. | Unannotated protein; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.549 |
GCA_002104455_00079 | secD | GCA_002104455_00079 | GCA_002104455_00626 | Unannotated protein. | Unannotated protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.513 |
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