STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002104455_00101Unannotated protein. (203 aa)    
Predicted Functional Partners:
GCA_002104455_01565
Unannotated protein.
  
 
  0.646
GCA_002104455_00102
Unannotated protein.
 
     0.613
GCA_002104455_00565
Unannotated protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.599
fumC
Unannotated protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.544
GCA_002104455_03557
Unannotated protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
  0.498
GCA_002104455_00467
Unannotated protein.
  
 
 0.478
GCA_002104455_02578
Unannotated protein.
  
 
 0.478
GCA_002104455_03556
Unannotated protein.
  
 
  0.476
GCA_002104455_03558
Unannotated protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
   
 
  0.469
GCA_002104455_03559
Unannotated protein.
   
 
  0.465
Your Current Organism:
Colwellia chukchiensis
NCBI taxonomy Id: 641665
Other names: C. chukchiensis, CGMCC 1.9127, Colwellia chukchiensis Yu et al. 2011, Colwellia sp. BCw111, DSM 22576, LMG 25329, LMG:25329, strain BCw111
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.