Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_002104455_00227 | GCA_002104455_01692 | GCA_002104455_00227 | GCA_002104455_01692 | Unannotated protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.921 |
GCA_002104455_00227 | GCA_002104455_01741 | GCA_002104455_00227 | GCA_002104455_01741 | Unannotated protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Unannotated protein. | 0.545 |
GCA_002104455_01220 | GCA_002104455_01692 | GCA_002104455_01220 | GCA_002104455_01692 | Unannotated protein; Belongs to the elongation factor P family. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.552 |
GCA_002104455_01220 | GCA_002104455_01741 | GCA_002104455_01220 | GCA_002104455_01741 | Unannotated protein; Belongs to the elongation factor P family. | Unannotated protein. | 0.494 |
GCA_002104455_01220 | metG | GCA_002104455_01220 | GCA_002104455_00881 | Unannotated protein; Belongs to the elongation factor P family. | Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.553 |
GCA_002104455_01220 | rplS | GCA_002104455_01220 | GCA_002104455_00137 | Unannotated protein; Belongs to the elongation factor P family. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.945 |
GCA_002104455_01220 | rpmF | GCA_002104455_01220 | GCA_002104455_03060 | Unannotated protein; Belongs to the elongation factor P family. | Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family. | 0.967 |
GCA_002104455_01220 | tig | GCA_002104455_01220 | GCA_002104455_00443 | Unannotated protein; Belongs to the elongation factor P family. | Unannotated protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.765 |
GCA_002104455_01692 | GCA_002104455_00227 | GCA_002104455_01692 | GCA_002104455_00227 | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | Unannotated protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.921 |
GCA_002104455_01692 | GCA_002104455_01220 | GCA_002104455_01692 | GCA_002104455_01220 | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | Unannotated protein; Belongs to the elongation factor P family. | 0.552 |
GCA_002104455_01692 | GCA_002104455_01740 | GCA_002104455_01692 | GCA_002104455_01740 | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | Unannotated protein. | 0.451 |
GCA_002104455_01692 | GCA_002104455_01741 | GCA_002104455_01692 | GCA_002104455_01741 | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | Unannotated protein. | 0.463 |
GCA_002104455_01692 | metG | GCA_002104455_01692 | GCA_002104455_00881 | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.581 |
GCA_002104455_01692 | tig | GCA_002104455_01692 | GCA_002104455_00443 | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | Unannotated protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.570 |
GCA_002104455_01740 | GCA_002104455_01692 | GCA_002104455_01740 | GCA_002104455_01692 | Unannotated protein. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.451 |
GCA_002104455_01740 | GCA_002104455_01741 | GCA_002104455_01740 | GCA_002104455_01741 | Unannotated protein. | Unannotated protein. | 0.543 |
GCA_002104455_01741 | GCA_002104455_00227 | GCA_002104455_01741 | GCA_002104455_00227 | Unannotated protein. | Unannotated protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.545 |
GCA_002104455_01741 | GCA_002104455_01220 | GCA_002104455_01741 | GCA_002104455_01220 | Unannotated protein. | Unannotated protein; Belongs to the elongation factor P family. | 0.494 |
GCA_002104455_01741 | GCA_002104455_01692 | GCA_002104455_01741 | GCA_002104455_01692 | Unannotated protein. | Unannotated protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.463 |
GCA_002104455_01741 | GCA_002104455_01740 | GCA_002104455_01741 | GCA_002104455_01740 | Unannotated protein. | Unannotated protein. | 0.543 |
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