STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002104455_02573Unannotated protein. (571 aa)    
Predicted Functional Partners:
GCA_002104455_00105
Unannotated protein.
  
   0.873
GCA_002104455_02572
Unannotated protein.
 
    
0.802
GCA_002104455_01635
Unannotated protein.
 
 0.760
GCA_002104455_03288
Unannotated protein.
  
   0.609
GCA_002104455_02574
Unannotated protein.
  
    0.573
GCA_002104455_02575
Unannotated protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.563
GCA_002104455_02571
Unannotated protein.
  
    0.545
GCA_002104455_00378
Unannotated protein.
   
   0.541
GCA_002104455_00513
Unannotated protein.
   
   0.541
GCA_002104455_00989
Unannotated protein.
   
   0.541
Your Current Organism:
Colwellia chukchiensis
NCBI taxonomy Id: 641665
Other names: C. chukchiensis, CGMCC 1.9127, Colwellia chukchiensis Yu et al. 2011, Colwellia sp. BCw111, DSM 22576, LMG 25329, LMG:25329, strain BCw111
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.