STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD67782.1L-seryl-tRNA(Ser) seleniumtransferase. (417 aa)    
Predicted Functional Partners:
SDD67813.1
Dihydroorotase.
 
    0.924
SDD67851.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.833
SDF04303.1
Dihydroorotase.
 
    0.832
SDF04330.1
Dihydroorotase.
 
    0.830
SDD67890.1
Regulator of RNase E activity RraA.
 
     0.804
SDD58207.1
seryl-tRNA synthetase.
     
 0.772
SDD67746.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
     0.762
SDF04435.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.732
SDF18332.1
Regulator of RNase E activity RraA.
 
     0.731
SDF18874.1
Demethylmenaquinone methyltransferase.
 
     0.721
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
Server load: low (24%) [HD]