STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD70086.1Polymer-forming protein. (150 aa)    
Predicted Functional Partners:
SDD70118.1
Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter.
       0.795
SDF14327.1
Peptidase family M23.
 
   
 0.683
SDD70051.1
Protein involved in gliding motility SprE.
       0.607
SDF09450.1
Hypothetical protein.
  
    0.562
SDD72422.1
Peptidase family M23.
 
   
 0.558
SDE11768.1
AsmA family protein.
  
     0.548
SDD70154.1
Hypothetical protein.
       0.513
SDE96052.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
   
 0.479
SDD70831.1
Penicillin-binding protein 1A.
 
 
   0.425
SDE59380.1
Protein of unknown function.
    
   0.414
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.