STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD72785.1Periplasmic chaperone for outer membrane proteins Skp. (175 aa)    
Predicted Functional Partners:
SDE67125.1
Hypothetical protein.
  
     0.754
SDE79053.1
Hypothetical protein.
  
     0.739
SDD70485.1
Tetratricopeptide repeat-containing protein.
  
     0.738
SDD63946.1
Hypothetical protein.
  
     0.691
SDE79891.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
     0.687
SDD67645.1
Putative DNA-binding domain-containing protein.
  
     0.664
SDD73412.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.658
SDD70970.1
Hypothetical protein.
  
     0.651
SDD58243.1
Tetratricopeptide repeat-containing protein.
  
  
 0.641
SDE62116.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.634
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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