STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD91615.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
SDD91578.1
Hypothetical protein.
 
     0.946
SDD91535.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
     0.945
SDD74741.1
Hypothetical protein.
 
     0.786
SDD74769.1
Type IV secretory system Conjugative DNA transfer.
 
     0.786
SDF00160.1
Protein of unknown function.
  
     0.773
SDD91409.1
Protein of unknown function.
  
     0.772
SDD91261.1
Bacteroides conjugation system ATPase, TraG family.
  
     0.771
SDD91376.1
Hypothetical protein.
  
     0.771
SDF00131.1
Hypothetical protein.
  
     0.771
SDD91450.1
Protein of unknown function.
  
     0.770
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.