STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD92821.1Polysaccharide deacetylase. (324 aa)    
Predicted Functional Partners:
SDD92857.1
Protoporphyrinogen oxidase.
 
     0.916
SDD92727.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.778
SDD92900.1
UDP-glucose 4-epimerase.
 
    0.742
SDD58499.1
Lysophospholipase L1.
  
     0.619
SDD92484.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.583
SDE78946.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.565
SDE76242.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.482
SDD73369.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
  0.470
SDF10288.1
Adhesin/invasin.
  
  
  0.468
SDD92788.1
Sulfotransferase family protein.
       0.452
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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