STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE32464.1Transcriptional regulator, GntR family. (379 aa)    
Predicted Functional Partners:
SDE32500.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
     0.901
SDE32566.1
Sugar (pentulose or hexulose) kinase.
 
   
 0.867
SDE32531.1
L-rhamnose isomerase / sugar isomerase.
 
     0.826
tal-2
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
    
  0.765
SDE32634.1
Purine-cytosine permease.
 
    0.733
SDD64477.1
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.633
SDD82510.1
Transcriptional regulator, AraC family.
  
  
 0.596
SDD92971.1
Transcriptional regulator, AraC family.
  
  
 0.596
SDD95212.1
AraC-type DNA-binding protein.
  
  
 0.596
SDE06568.1
Hypothetical protein.
  
     0.581
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.