Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDE08762.1 | SDE08821.1 | SAMN05421636_103197 | SAMN05421636_103199 | RNA polymerase sigma-70 factor, ECF subfamily. | Outer membrane receptor proteins, mostly Fe transport. | 0.829 |
SDE08762.1 | SDE35256.1 | SAMN05421636_103197 | SAMN05421636_104448 | RNA polymerase sigma-70 factor, ECF subfamily. | FecR family protein. | 0.737 |
SDE08762.1 | SDE84006.1 | SAMN05421636_103197 | SAMN05421636_1082 | RNA polymerase sigma-70 factor, ECF subfamily. | FecR family protein. | 0.417 |
SDE08821.1 | SDE08762.1 | SAMN05421636_103199 | SAMN05421636_103197 | Outer membrane receptor proteins, mostly Fe transport. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.829 |
SDE08821.1 | SDE35256.1 | SAMN05421636_103199 | SAMN05421636_104448 | Outer membrane receptor proteins, mostly Fe transport. | FecR family protein. | 0.707 |
SDE08821.1 | SDE35284.1 | SAMN05421636_103199 | SAMN05421636_104449 | Outer membrane receptor proteins, mostly Fe transport. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.614 |
SDE35213.1 | SDE35239.1 | SAMN05421636_104446 | SAMN05421636_104447 | Hypothetical protein. | Outer membrane receptor proteins, mostly Fe transport. | 0.773 |
SDE35213.1 | SDE35256.1 | SAMN05421636_104446 | SAMN05421636_104448 | Hypothetical protein. | FecR family protein. | 0.773 |
SDE35213.1 | SDE35284.1 | SAMN05421636_104446 | SAMN05421636_104449 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.527 |
SDE35239.1 | SDE35213.1 | SAMN05421636_104447 | SAMN05421636_104446 | Outer membrane receptor proteins, mostly Fe transport. | Hypothetical protein. | 0.773 |
SDE35239.1 | SDE35256.1 | SAMN05421636_104447 | SAMN05421636_104448 | Outer membrane receptor proteins, mostly Fe transport. | FecR family protein. | 0.944 |
SDE35239.1 | SDE35284.1 | SAMN05421636_104447 | SAMN05421636_104449 | Outer membrane receptor proteins, mostly Fe transport. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.809 |
SDE35256.1 | SDE08762.1 | SAMN05421636_104448 | SAMN05421636_103197 | FecR family protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.737 |
SDE35256.1 | SDE08821.1 | SAMN05421636_104448 | SAMN05421636_103199 | FecR family protein. | Outer membrane receptor proteins, mostly Fe transport. | 0.707 |
SDE35256.1 | SDE35213.1 | SAMN05421636_104448 | SAMN05421636_104446 | FecR family protein. | Hypothetical protein. | 0.773 |
SDE35256.1 | SDE35239.1 | SAMN05421636_104448 | SAMN05421636_104447 | FecR family protein. | Outer membrane receptor proteins, mostly Fe transport. | 0.944 |
SDE35256.1 | SDE35284.1 | SAMN05421636_104448 | SAMN05421636_104449 | FecR family protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.910 |
SDE35256.1 | SDE84006.1 | SAMN05421636_104448 | SAMN05421636_1082 | FecR family protein. | FecR family protein. | 0.816 |
SDE35256.1 | SDF05839.1 | SAMN05421636_104448 | SAMN05421636_110109 | FecR family protein. | Protein of unknown function. | 0.688 |
SDE35256.1 | SDF17122.1 | SAMN05421636_104448 | SAMN05421636_1151 | FecR family protein. | Protein of unknown function. | 0.694 |
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