STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE24062.1Polyhydroxybutyrate depolymerase. (302 aa)    
Predicted Functional Partners:
SDE24026.1
Chaperone of endosialidase.
       0.536
SDF03081.1
Endo-1,4-beta-xylanase.
   
   0.458
SDF03959.1
Endo-1,4-beta-xylanase.
   
   0.458
SDE08524.1
Enterochelin esterase.
   
   0.428
SDE78282.1
Putative esterase.
   
   0.428
SDE98414.1
Enterochelin esterase.
   
   0.428
SDF03268.1
Enterochelin esterase.
   
   0.428
SDF03300.1
Enterochelin esterase.
   
   0.428
SDF03420.1
Enterochelin esterase.
   
   0.428
SDE23994.1
Acetylornithine/succinyldiaminopimelate/putresci ne aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.423
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.