STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE48179.1Iron complex outermembrane recepter protein. (689 aa)    
Predicted Functional Partners:
SDE48206.1
Hypothetical protein.
 
     0.639
SDE47898.1
Cu-processing system permease protein.
 
     0.593
SDE48149.1
Hypothetical protein.
       0.567
SDE48112.1
Cytochrome c, mono-and diheme variants.
 
     0.525
SDE47624.1
Hypothetical protein.
  
     0.522
SDE47966.1
Nitrous oxidase accessory protein.
 
     0.519
SDE48057.1
Hypothetical protein.
 
     0.510
SDE13706.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.508
SDE48735.1
Protein TonB.
   
   0.508
SDE92522.1
Outer membrane transport energization protein TonB.
   
   0.508
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.