STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE50922.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
SDE90885.1
Aspartate kinase.
    
  0.836
SDE85938.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.701
SDE58912.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
    0.686
SDE06134.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.663
fabH
3-oxoacyl-[acyl-carrier-protein] synthase-3; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
 
     0.646
SDE13064.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.598
SDE85789.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.591
SDE13204.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.542
SDE90477.1
5,10-methylenetetrahydrofolate reductase (NAD(P)); Belongs to the methylenetetrahydrofolate reductase family.
 
  
  0.518
SDE90910.1
O-acetylhomoserine sulfhydrylase.
    
  0.514
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.