STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE58260.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
SDE58233.1
Hypothetical protein.
 
     0.953
SDE58289.1
23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.757
SDD58536.1
Hypothetical protein.
  
     0.750
SDE15424.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.742
SDE28045.1
Hypothetical protein.
  
     0.739
SDE58427.1
Hypothetical protein.
  
     0.737
SDE79514.1
Protein of unknown function.
  
     0.737
SDE08085.1
Protein of unknown function.
  
     0.735
SDE66984.1
Hypothetical protein.
  
     0.730
SDE25695.1
Hypothetical protein.
  
     0.727
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.