STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE60038.1DinB superfamily protein. (177 aa)    
Predicted Functional Partners:
SDE60065.1
N-acetylated-alpha-linked acidic dipeptidase.
 
     0.815
SDF03861.1
Starch-binding associating with outer membrane.
  
     0.572
SDF03897.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.509
SDE49979.1
Hypothetical protein.
  
     0.503
SDE60015.1
Putative signal transducing protein.
       0.499
SDE68088.1
Hypothetical protein.
  
     0.476
SDE74115.1
Starch-binding associating with outer membrane.
  
     0.426
SDE74096.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.419
SDE31763.1
Protein of unknown function, DUF481.
  
     0.403
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.