STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE74063.1FecR family protein. (392 aa)    
Predicted Functional Partners:
SDE74022.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
  0.885
SDF19231.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  0.795
SDD88091.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  0.793
SDE26274.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  0.791
SDF18065.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  0.747
SDF19160.1
Secretin and TonB N terminus short domain-containing protein.
  
    0.685
SDE83980.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
  0.683
SDE64297.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  0.660
SDE35256.1
FecR family protein.
  
  
 
0.572
SDE52928.1
TonB dependent receptor.
 
 
 0.569
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.