STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE90262.1Prephenate dehydrogenase. (285 aa)    
Predicted Functional Partners:
SDE90231.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
 0.994
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
 
 
 0.987
SDE90322.1
Prephenate dehydratase.
 
 
 0.977
SDE06543.1
Histidinol-phosphate aminotransferase.
 
 
 0.968
SDE51481.1
Histidinol-phosphate aminotransferase.
 
 
 0.951
cmk
Cytidylate kinase.
 
 
 0.948
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
 
 
 0.929
SDE90293.1
Aspartate/methionine/tyrosine aminotransferase.
 
  
 0.924
SDE05625.1
Aspartate aminotransferase.
    
 0.898
SDE87619.1
Aspartate aminotransferase.
    
 0.898
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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