STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE85888.1Thrombospondin type 3 repeat-containing protein. (1168 aa)    
Predicted Functional Partners:
SDF04112.1
PKD domain-containing protein.
  
 0.891
SDE85915.1
WD40-like Beta Propeller Repeat.
 
 
  0.592
SDD84434.1
Protein of unknown function.
  
     0.539
SDE85938.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.510
SDE78946.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.501
SDF04180.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.486
SDD72510.1
WD40-like Beta Propeller Repeat.
 
  0.480
SDE46018.1
Hypothetical protein.
   
  0.477
SDD74150.1
Subtilase family protein; Belongs to the peptidase S8 family.
   
  0.470
SDE84901.1
Serine protease, subtilisin family.
   
  0.470
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.