STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF04838.1Repeat domain-containing protein. (1097 aa)    
Predicted Functional Partners:
SDD85436.1
PAP2 superfamily protein.
 
    0.774
SDF11903.1
PAP2 superfamily protein.
 
    0.774
SDF04808.1
Hypothetical protein.
       0.773
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.747
SDE14426.1
PAP2 superfamily protein.
    0.545
SDF04876.1
Glycosyl hydrolases family 31; Belongs to the glycosyl hydrolase 31 family.
       0.522
SDE75313.1
Repeat domain-containing protein.
  
     0.511
SDF04775.1
Predicted acyltransferase.
       0.506
SDE99640.1
Repeat domain-containing protein.
  
     0.497
SDE50661.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.475
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.