STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF14485.1Outer membrane protein beta-barrel family protein. (918 aa)    
Predicted Functional Partners:
SDD64647.1
Starch-binding associating with outer membrane.
  
 
   0.640
SDE74115.1
Starch-binding associating with outer membrane.
  
 
   0.600
SDD91923.1
Starch-binding associating with outer membrane.
  
 
   0.557
SDE50842.1
Starch-binding associating with outer membrane.
  
 
   0.554
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.553
SDE35931.1
Long-chain fatty acid transport protein.
  
     0.548
SDD68015.1
Starch-binding associating with outer membrane.
  
 
   0.539
SDE15884.1
RagB/SusD domain-containing protein.
  
 
   0.539
SDE65395.1
Hypothetical protein.
  
     0.525
SDE92522.1
Outer membrane transport energization protein TonB.
  
   0.525
Your Current Organism:
Pricia antarctica
NCBI taxonomy Id: 641691
Other names: DSM 23421, JCM 17291, Maribacter sp. ZS1-8, P. antarctica, Pricia antarctica Yu et al. 2012, strain ZS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.