Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC114593314Microtubule-associated proteins 1A/1B light chain 3C-like. (128 aa)    
Predicted Functional Partners:
ATG4B
LOW QUALITY PROTEIN: cysteine protease ATG4B.
   
 0.971
CALCOCO2
Calcium-binding and coiled-coil domain-containing protein 2 isoform X1.
   
 0.962
SQSTM1
Sequestosome-1 isoform X1.
   
 0.960
NBR1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.960
ATG3
Ubiquitin-like-conjugating enzyme ATG3.
   
 0.953
ATG7
Ubiquitin-like modifier-activating enzyme ATG7.
   
 0.948
PLEKHM1
LOW QUALITY PROTEIN: pleckstrin homology domain-containing family M member 1.
    
 0.917
ATG4A
Cysteine protease ATG4A isoform X1.
   
 0.912
ATG12
Ubiquitin-like protein ATG12.
   
 0.882
ULK1
Unc-51 like autophagy activating kinase 1.
   
 0.880
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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