Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COPZ1Coatomer subunit zeta-1 isoform X1. (207 aa)    
Predicted Functional Partners:
ARCN1
Coatomer subunit delta.
   
 0.986
COPB1
Coatomer subunit beta.
   
 0.982
COPB2
Coatomer subunit beta.
   
 0.980
COPE
Coatomer subunit epsilon.
   
 0.978
COPA
Coatomer subunit alpha.
   
 0.977
COPG1
Coatomer subunit gamma-1.
   
 0.959
COPG2
Coatomer subunit gamma-2 isoform X1.
   
 0.959
NBAS
Neuroblastoma-amplified sequence isoform X1.
     
 0.805
BET1
Blocked early in transport 1.
   
 0.726
YKT6
Synaptobrevin homolog YKT6.
   
 0.698
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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