STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBR3E3 ubiquitin-protein ligase UBR3 isoform X1. (1839 aa)    
Predicted Functional Partners:
HECTD1
E3 ubiquitin-protein ligase HECTD1 isoform X1.
   
  
 0.713
CUL5
Cullin 5.
   
    0.652
UBR7
Putative E3 ubiquitin-protein ligase UBR7.
      
 0.576
ATE1
Arginyl-tRNA--protein transferase 1 isoform X1.
   
  
 0.529
TRIP12
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12.
   
 
 0.511
ATMIN
ATM interactor isoform X1.
      
 0.478
WDYHV1
Protein N-terminal glutamine amidohydrolase isoform X1.
      
 0.435
NTAN1
Protein N-terminal asparagine amidohydrolase.
      
 0.428
KLHL23
LOW QUALITY PROTEIN: kelch-like protein 23.
     
 0.412
FBXO11
LOW QUALITY PROTEIN: F-box only protein 11.
   
  
 0.407
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.