Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTF2Replication termination factor 2. (309 aa)    
Predicted Functional Partners:
TULP2
TUB like protein 2.
   
  
 0.867
TRMT1
TRNA (guanine(26)-N(2))-dimethyltransferase isoform X1.
    
   0.866
YARS1
Tyrosine--tRNA ligase, cytoplasmic.
    
   0.863
ZFAND4
AN1-type zinc finger and ubiquitin domain-containing protein 1.
      
 0.819
SPATA16
Spermatogenesis-associated protein 16.
      
 0.698
RTF1
LOW QUALITY PROTEIN: RNA polymerase-associated protein RTF1 homolog.
      
 0.687
SPACA9
Sperm acrosome-associated protein 9 isoform X1.
      
 0.639
PRRX1
Paired mesoderm homeobox protein 1 isoform X1.
      
 0.629
NRIP3
Nuclear receptor-interacting protein 3 isoform X1.
      
 0.583
ENSPMRP00000011986
Glutamine-rich protein 2-like.
   
  
 0.583
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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