RNGTT protein (Podarcis muralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNGTT

MRNA-capping enzyme isoform X1. (599 aa)

Predicted Functional Partners:

SUPT5H

0.992

RNMT

0.979

POLR2A

0.975

NCOR2

0.913

NCOR1

0.913

POLR2C

0.841

LOC114606059

0.800

LOC114589088

0.800

POLR2G

0.780

NCBP1

0.779

Your Current Organism:

Podarcis muralis

NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114589088	LOC114606059	ENSPMRP00000036388	ENSPMRP00000027476	Nuclear cap-binding protein subunit 2-like.	Nuclear cap-binding protein subunit 2.	0.900
LOC114589088	NCBP1	ENSPMRP00000036388	ENSPMRP00000033458	Nuclear cap-binding protein subunit 2-like.	Nuclear cap-binding protein subunit 1 isoform X1.	0.997
LOC114589088	POLR2A	ENSPMRP00000036388	ENSPMRP00000017745	Nuclear cap-binding protein subunit 2-like.	DNA-directed RNA polymerase II subunit RPB1.	0.676
LOC114589088	POLR2C	ENSPMRP00000036388	ENSPMRP00000030198	Nuclear cap-binding protein subunit 2-like.	DNA-directed RNA polymerase II subunit RPB3.	0.701
LOC114589088	POLR2G	ENSPMRP00000036388	ENSPMRP00000027743	Nuclear cap-binding protein subunit 2-like.	DNA-directed RNA polymerase II subunit RPB7 isoform X1.	0.672
LOC114589088	RNGTT	ENSPMRP00000036388	ENSPMRP00000006808	Nuclear cap-binding protein subunit 2-like.	MRNA-capping enzyme isoform X1.	0.800
LOC114589088	RNMT	ENSPMRP00000036388	ENSPMRP00000012337	Nuclear cap-binding protein subunit 2-like.	MRNA cap guanine-N7 methyltransferase.	0.755
LOC114589088	SUPT5H	ENSPMRP00000036388	ENSPMRP00000021791	Nuclear cap-binding protein subunit 2-like.	Transcription elongation factor SPT5 isoform X1.	0.724
LOC114606059	LOC114589088	ENSPMRP00000027476	ENSPMRP00000036388	Nuclear cap-binding protein subunit 2.	Nuclear cap-binding protein subunit 2-like.	0.900
LOC114606059	NCBP1	ENSPMRP00000027476	ENSPMRP00000033458	Nuclear cap-binding protein subunit 2.	Nuclear cap-binding protein subunit 1 isoform X1.	0.997
LOC114606059	POLR2A	ENSPMRP00000027476	ENSPMRP00000017745	Nuclear cap-binding protein subunit 2.	DNA-directed RNA polymerase II subunit RPB1.	0.676
LOC114606059	POLR2C	ENSPMRP00000027476	ENSPMRP00000030198	Nuclear cap-binding protein subunit 2.	DNA-directed RNA polymerase II subunit RPB3.	0.701
LOC114606059	POLR2G	ENSPMRP00000027476	ENSPMRP00000027743	Nuclear cap-binding protein subunit 2.	DNA-directed RNA polymerase II subunit RPB7 isoform X1.	0.672
LOC114606059	RNGTT	ENSPMRP00000027476	ENSPMRP00000006808	Nuclear cap-binding protein subunit 2.	MRNA-capping enzyme isoform X1.	0.800
LOC114606059	RNMT	ENSPMRP00000027476	ENSPMRP00000012337	Nuclear cap-binding protein subunit 2.	MRNA cap guanine-N7 methyltransferase.	0.755
LOC114606059	SUPT5H	ENSPMRP00000027476	ENSPMRP00000021791	Nuclear cap-binding protein subunit 2.	Transcription elongation factor SPT5 isoform X1.	0.724
NCBP1	LOC114589088	ENSPMRP00000033458	ENSPMRP00000036388	Nuclear cap-binding protein subunit 1 isoform X1.	Nuclear cap-binding protein subunit 2-like.	0.997
NCBP1	LOC114606059	ENSPMRP00000033458	ENSPMRP00000027476	Nuclear cap-binding protein subunit 1 isoform X1.	Nuclear cap-binding protein subunit 2.	0.997
NCBP1	POLR2A	ENSPMRP00000033458	ENSPMRP00000017745	Nuclear cap-binding protein subunit 1 isoform X1.	DNA-directed RNA polymerase II subunit RPB1.	0.699
NCBP1	POLR2C	ENSPMRP00000033458	ENSPMRP00000030198	Nuclear cap-binding protein subunit 1 isoform X1.	DNA-directed RNA polymerase II subunit RPB3.	0.731