STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYSTLOW QUALITY PROTEIN: lysosomal-trafficking regulator. (3811 aa)    
Predicted Functional Partners:
ATG5
Autophagy-related protein 5.
    
 0.808
ATG12
Ubiquitin-like protein ATG12.
    
 0.771
VPS18
Vacuolar protein sorting-associated protein 18 homolog.
   
  
 0.678
VPS11
Vacuolar protein sorting-associated protein 11 homolog.
   
  
 0.669
VPS39
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.
      
 0.646
VTA1
Vacuolar protein sorting-associated protein VTA1 homolog.
    
 
 0.601
ATG16L2
LOW QUALITY PROTEIN: autophagy-related protein 16-2.
    
 0.576
ATG16L1
Autophagy-related protein 16-1 isoform X1.
    
 0.576
SMPD2
Sphingomyelin phosphodiesterase 2 isoform X1.
     
 0.570
SQSTM1
Sequestosome-1 isoform X1.
   
 
 0.548
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.