STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPOCD1SPOC domain-containing protein 1. (1194 aa)    
Predicted Functional Partners:
NIPBL
Cohesin loading factor subunit SCC2.
   
  
 0.734
TRIP12
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12.
   
  
 0.706
RBBP5
Retinoblastoma-binding protein 5 isoform X1.
   
 
  0.686
POLR2I
RNA polymerase II subunit I.
    
 0.675
SETD2
[histone H3]-dimethyl-L-lysine36 N-methyltransferase.
   
 
 0.670
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
    
  0.670
BPTF
Bromodomain PHD finger transcription factor.
   
 
  0.667
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
   
 0.650
LOC114588501
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.643
ENSPMRP00000031952
annotation not available
    
  0.643
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.