STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMRP00000027948Collagen alpha-1(XXVIII) chain-like. (236 aa)    
Predicted Functional Partners:
ENSPMRP00000027956
Collagen alpha-1(XXVIII) chain-like.
 
    
0.907
COL28A1
LOW QUALITY PROTEIN: collagen alpha-1(XXVIII) chain.
 
     
0.830
ARID4B
AT-rich interactive domain-containing protein 4B isoform X1.
    
 0.507
ARID4A
AT-rich interactive domain-containing protein 4A isoform X1.
    
 0.507
MYSM1
Histone H2A deubiquitinase MYSM1 isoform X1.
    
 0.489
LEO1
RNA polymerase-associated protein LEO1.
    
 0.436
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.