STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SATB1DNA-binding protein SATB1 isoform X1. (688 aa)    
Predicted Functional Partners:
UBE2I
Ubiquitin-conjugating enzyme E2 I.
    
  0.668
LHX2
LIM/homeobox protein Lhx2 isoform X1.
    
 
 0.659
RORB
RAR-related orphan receptor beta.
      
 0.657
CACNA1H
Voltage-dependent T-type calcium channel subunit alpha-1H.
   
  
 0.657
NHLH2
Nescient helix-loop-helix protein.
    
 
 0.657
RORA
Nuclear receptor ROR-alpha isoform X1.
      
 0.657
SLC17A6
Vesicular glutamate transporter 2.
      
 0.655
SULF2
Extracellular sulfatase Sulf-2 isoform X1.
      
 0.655
SLC32A1
Solute carrier family 32 (vesicular inhibitory amino acid transporter).
      
 0.655
CASP6
Caspase-6 isoform X1.
    
 0.645
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.