STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MAP1LC3AMicrotubule-associated proteins 1A/1B light chain 3A. (57 aa)    
Predicted Functional Partners:
NBR1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.997
SQSTM1
Sequestosome-1 isoform X1.
   
 0.933
ATG7
Ubiquitin-like modifier-activating enzyme ATG7.
   
 0.911
ATG3
Ubiquitin-like-conjugating enzyme ATG3.
   
 0.898
FUNDC1
FUN14 domain-containing protein 1.
    
 0.888
ATG4B
LOW QUALITY PROTEIN: cysteine protease ATG4B.
   
 0.888
ATG4A
Cysteine protease ATG4A isoform X1.
   
 0.856
ATG12
Ubiquitin-like protein ATG12.
   
 0.844
ATG5
Autophagy-related protein 5.
   
 0.837
MIB2
E3 ubiquitin-protein ligase MIB2 isoform X1.
   
 0.824
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.