STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3B3Splicing factor 3B subunit 3. (1218 aa)    
Predicted Functional Partners:
SF3B5
Splicing factor 3B subunit 5.
   
 0.999
PRPF6
Pre-mRNA-processing factor 6.
   
 0.999
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.999
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.999
SF3B6
Pre-mRNA branch site protein p14.
    
 0.999
SF3B2
Splicing factor 3B subunit 2.
   
 0.999
ENSPMRP00000024611
RNA-binding motif protein, X-linked 2-like.
    
 0.999
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.999
SF3B4
LOW QUALITY PROTEIN: splicing factor 3B subunit 4.
   
 0.999
SF3A3
Splicing factor 3A subunit 3.
   
 0.999
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.