STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOX5Transcription factor SOX5/6/13 (SOX group D). (778 aa)    
Predicted Functional Partners:
ATP2A2
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform X1.
      
 0.774
SBNO1
Protein strawberry notch homolog 1.
      
 0.765
TRIP12
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12.
    
 
 0.753
SOX9
Transcription factor SOX9 (SOX group E).
    
0.719
SOX6
Transcription factor SOX5/6/13 (SOX group D).
  
 
 
0.712
ZNF536
Zinc finger protein 536 isoform X1.
    
 
 0.660
CTNNB1
Catenin beta 1.
   
 0.658
FOXP2
Forkhead box P2.
    
 
 0.657
FGF4
Fibroblast growth factor 4.
      
 0.655
PAX1
Paired box protein Pax-1 isoform X1.
      
 0.655
Your Current Organism:
Podarcis muralis
NCBI taxonomy Id: 64176
Other names: Common wall lizard, Lacerrta muralis, Mauereidechse, P. muralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.