STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ82302.1KEGG: ccb:Clocel_4325 hypothetical protein. (150 aa)    
Predicted Functional Partners:
ADZ82301.1
KEGG: csh:Closa_3410 transcriptional regulator, AraC family; PFAM: Bacterial transcription activator, effector binding; HTH transcriptional regulator, AraC; SMART: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type, DNA binding domain.
 
     0.833
ADZ82217.1
DNA-binding SAP domain protein; KEGG: elm:ELI_1484 hypothetical cytosolic protein; PFAM: DNA-binding SAP; SMART: DNA-binding SAP.
 
     0.656
ADZ84260.1
KEGG: cpy:Cphy_0953 hypothetical protein.
  
     0.637
ADZ81972.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsy:DSY0048 hypothetical protein.
  
     0.633
ADZ82688.1
Hypothetical protein.
  
     0.617
ADZ83567.1
Hypothetical protein.
  
     0.616
ADZ85567.1
KEGG: cdf:CD1724 hypothetical protein.
  
     0.599
ADZ82300.1
KEGG: cdl:CDR20291_3230 putative DNA mismatch repair protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; ATPase, AAA+ type, core.
 
     0.556
ADZ81971.1
SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: dsy:DSY0047 hypothetical protein.
 
     0.520
ADZ82303.1
KEGG: cce:Ccel_1074 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR.
       0.518
Your Current Organism:
Cellulosilyticum lentocellum
NCBI taxonomy Id: 642492
Other names: C. lentocellum DSM 5427, Cellulosilyticum lentocellum DSM 5427, Clostridium lentocellum ATCC 49066, Clostridium lentocellum DSM 5427, Clostridium lentocellum str. DSM 5427, Clostridium lentocellum strain DSM 5427
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.