Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADZ82249.1 | ADZ82405.1 | Clole_0511 | Clole_0671 | PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bhy:BHWA1_00868 periplasmic-iron-binding protein BitB. | PFAM: Major facilitator superfamily MFS-1; KEGG: ljo:LJ0057 bile salt transporter. | 0.618 |
ADZ82404.1 | ADZ82405.1 | Clole_0670 | Clole_0671 | PFAM: Pentapeptide repeat; KEGG: cbt:CLH_1994 pentapeptide repeat protein. | PFAM: Major facilitator superfamily MFS-1; KEGG: ljo:LJ0057 bile salt transporter. | 0.409 |
ADZ82405.1 | ADZ82249.1 | Clole_0671 | Clole_0511 | PFAM: Major facilitator superfamily MFS-1; KEGG: ljo:LJ0057 bile salt transporter. | PFAM: Bacterial extracellular solute-binding, family 1; KEGG: bhy:BHWA1_00868 periplasmic-iron-binding protein BitB. | 0.618 |
ADZ82405.1 | ADZ82404.1 | Clole_0671 | Clole_0670 | PFAM: Major facilitator superfamily MFS-1; KEGG: ljo:LJ0057 bile salt transporter. | PFAM: Pentapeptide repeat; KEGG: cbt:CLH_1994 pentapeptide repeat protein. | 0.409 |
ADZ82405.1 | ADZ85904.1 | Clole_0671 | Clole_4232 | PFAM: Major facilitator superfamily MFS-1; KEGG: ljo:LJ0057 bile salt transporter. | KEGG: cki:Calkr_1982 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal. | 0.489 |
ADZ82405.1 | polA | Clole_0671 | Clole_2063 | PFAM: Major facilitator superfamily MFS-1; KEGG: ljo:LJ0057 bile salt transporter. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.535 |
ADZ85904.1 | ADZ82405.1 | Clole_4232 | Clole_0671 | KEGG: cki:Calkr_1982 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal. | PFAM: Major facilitator superfamily MFS-1; KEGG: ljo:LJ0057 bile salt transporter. | 0.489 |
polA | ADZ82405.1 | Clole_2063 | Clole_0671 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | PFAM: Major facilitator superfamily MFS-1; KEGG: ljo:LJ0057 bile salt transporter. | 0.535 |