STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ83853.1Protein of unknown function DUF965; PFAM: Uncharacterised protein family UPF0297; KEGG: esi:Exig_2073 hypothetical protein; Belongs to the UPF0297 family. (83 aa)    
Predicted Functional Partners:
ADZ83854.1
Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
 
    0.962
ADZ84015.1
Helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
     0.760
ADZ84060.1
PFAM: Protein of unknown function DUF633; KEGG: tte:TTE1754 SAM-dependent methyltransferase.
  
     0.753
ADZ82800.1
PFAM: Protein of unknown function DUF951; KEGG: lbr:LVIS_2062 hypothetical protein.
  
     0.723
whiA
Sporulation regulator WhiA; Involved in cell division and chromosome segregation.
  
     0.686
ADZ85646.1
PFAM: Polysaccharide biosynthesis protein; KEGG: cth:Cthe_3064 polysaccharide biosynthesis protein.
  
     0.681
ADZ83490.1
PFAM: Fibronectin-binding A, N-terminal; Domain of unknown function DUF814; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein.
  
     0.668
mrnC
Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
     0.665
ADZ83852.1
RNA modification enzyme, MiaB family; TIGRFAM: Methylthiotransferase; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM; Methylthiotransferase, N-terminal; KEGG: cdl:CDR20291_2341 putative radical SAM superfamily protein; SMART: Elongator protein 3/MiaB/NifB.
       0.664
ADZ83621.1
PFAM: Polysaccharide biosynthesis protein; KEGG: cst:CLOST_0478 polysaccharide biosynthesis protein.
  
     0.659
Your Current Organism:
Cellulosilyticum lentocellum
NCBI taxonomy Id: 642492
Other names: C. lentocellum DSM 5427, Cellulosilyticum lentocellum DSM 5427, Clostridium lentocellum ATCC 49066, Clostridium lentocellum DSM 5427, Clostridium lentocellum str. DSM 5427, Clostridium lentocellum strain DSM 5427
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