STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ84444.1KEGG: cdf:CD2903 putative phage cell wall hydrolase. (326 aa)    
Predicted Functional Partners:
ADZ84441.1
PFAM: Baseplate assembly protein J-like, predicted; KEGG: dhd:Dhaf_1421 baseplate J family protein.
 
    0.967
ADZ84442.1
PFAM: Phage-like element PBSX protein, XkdS; KEGG: cdf:CD2901 phage protein.
 
    0.967
ADZ84445.1
KEGG: lsp:Bsph_1783 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
 
    0.962
ADZ84443.1
KEGG: str:Sterm_1444 hypothetical protein.
 
     0.961
ADZ84446.1
TIGRFAM: Tape measure domain; KEGG: cdl:CDR20291_1449 putative phage tail tape measure protein.
 
     0.961
ADZ84447.1
PFAM: Phage XkdN-like protein; KEGG: cdl:CDR20291_1444 phage protein.
 
     0.906
ADZ84448.1
PFAM: XkdM protein, phage-like element PBSX; KEGG: cdf:CD2909 phage protein.
 
     0.893
ADZ84449.1
KEGG: cdf:CD2910 phage protein.
 
    0.878
ADZ84451.1
Phage protein; KEGG: cdl:CDR20291_1440 phage protein.
 
     0.874
ADZ84452.1
PFAM: Protein of unknown function DUF646, phage head/tail component; KEGG: cpy:Cphy_2961 phage protein.
 
     0.874
Your Current Organism:
Cellulosilyticum lentocellum
NCBI taxonomy Id: 642492
Other names: C. lentocellum DSM 5427, Cellulosilyticum lentocellum DSM 5427, Clostridium lentocellum ATCC 49066, Clostridium lentocellum DSM 5427, Clostridium lentocellum str. DSM 5427, Clostridium lentocellum strain DSM 5427
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