Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADZ83676.1 | ADZ85785.1 | Clole_1959 | Clole_4109 | PFAM: Cytochrome P450; KEGG: cpy:Cphy_2911 cytochrome P450. | KEGG: ccb:Clocel_3369 quinoprotein glucose dehydrogenase. | 0.519 |
ADZ85708.1 | ADZ85785.1 | Clole_4030 | Clole_4109 | KEGG: cbe:Cbei_1438 hypothetical protein. | KEGG: ccb:Clocel_3369 quinoprotein glucose dehydrogenase. | 0.432 |
ADZ85784.1 | ADZ85785.1 | Clole_4108 | Clole_4109 | KEGG: ccb:Clocel_3908 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain. | KEGG: ccb:Clocel_3369 quinoprotein glucose dehydrogenase. | 0.464 |
ADZ85785.1 | ADZ83676.1 | Clole_4109 | Clole_1959 | KEGG: ccb:Clocel_3369 quinoprotein glucose dehydrogenase. | PFAM: Cytochrome P450; KEGG: cpy:Cphy_2911 cytochrome P450. | 0.519 |
ADZ85785.1 | ADZ85708.1 | Clole_4109 | Clole_4030 | KEGG: ccb:Clocel_3369 quinoprotein glucose dehydrogenase. | KEGG: cbe:Cbei_1438 hypothetical protein. | 0.432 |
ADZ85785.1 | ADZ85784.1 | Clole_4109 | Clole_4108 | KEGG: ccb:Clocel_3369 quinoprotein glucose dehydrogenase. | KEGG: ccb:Clocel_3908 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain. | 0.464 |