STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR77737.1Rod shape-determining protein MreB. (341 aa)    
Predicted Functional Partners:
SDR77761.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.998
SDR77818.1
Penicillin-binding protein 2.
 
 
 
 0.976
SDR69567.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
 
 0.972
SDR77849.1
Rod shape determining protein RodA; Belongs to the SEDS family.
 
 
 0.971
SDR77788.1
Rod shape-determining protein MreD.
 
  
 0.942
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.865
SDR70379.1
Peptidoglycan synthetase FtsI.
 
 
 
 0.806
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
 
 0.773
SDS86151.1
Cell elongation-specific peptidoglycan D,D-transpeptidase.
 
 
 
 0.745
SDR70503.1
Cell division-specific peptidoglycan biosynthesis regulator FtsW; Belongs to the SEDS family.
 
 
 0.727
Your Current Organism:
Marmoricola scoriae
NCBI taxonomy Id: 642780
Other names: DSM 22127, JCM 17444, KCTC 19597, M. scoriae, Marmoricola scoriae Lee and Lee 2010, Marmoricola sp. Sco-D01, strain Sco-D01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.