Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDS08003.1 | SDS13561.1 | SAMN04488570_1083 | SAMN04488570_1209 | Nucleotide-binding universal stress protein, UspA family. | YjbR protein. | 0.411 |
| SDS08003.1 | SDS53921.1 | SAMN04488570_1083 | SAMN04488570_2108 | Nucleotide-binding universal stress protein, UspA family. | Hypothetical protein. | 0.618 |
| SDS08003.1 | SDS54433.1 | SAMN04488570_1083 | SAMN04488570_2120 | Nucleotide-binding universal stress protein, UspA family. | Hemerythrin HHE cation binding domain-containing protein. | 0.478 |
| SDS13513.1 | SDS13561.1 | SAMN04488570_1208 | SAMN04488570_1209 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | YjbR protein. | 0.778 |
| SDS13513.1 | def-2 | SAMN04488570_1208 | SAMN04488570_1211 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.911 |
| SDS13513.1 | fmt | SAMN04488570_1208 | SAMN04488570_1210 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.997 |
| SDS13513.1 | priA | SAMN04488570_1208 | SAMN04488570_1212 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.853 |
| SDS13561.1 | SDS08003.1 | SAMN04488570_1209 | SAMN04488570_1083 | YjbR protein. | Nucleotide-binding universal stress protein, UspA family. | 0.411 |
| SDS13561.1 | SDS13513.1 | SAMN04488570_1209 | SAMN04488570_1208 | YjbR protein. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.778 |
| SDS13561.1 | SDS53921.1 | SAMN04488570_1209 | SAMN04488570_2108 | YjbR protein. | Hypothetical protein. | 0.492 |
| SDS13561.1 | SDS54433.1 | SAMN04488570_1209 | SAMN04488570_2120 | YjbR protein. | Hemerythrin HHE cation binding domain-containing protein. | 0.451 |
| SDS13561.1 | def-2 | SAMN04488570_1209 | SAMN04488570_1211 | YjbR protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.773 |
| SDS13561.1 | fmt | SAMN04488570_1209 | SAMN04488570_1210 | YjbR protein. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.844 |
| SDS13561.1 | priA | SAMN04488570_1209 | SAMN04488570_1212 | YjbR protein. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.522 |
| SDS53921.1 | SDS08003.1 | SAMN04488570_2108 | SAMN04488570_1083 | Hypothetical protein. | Nucleotide-binding universal stress protein, UspA family. | 0.618 |
| SDS53921.1 | SDS13561.1 | SAMN04488570_2108 | SAMN04488570_1209 | Hypothetical protein. | YjbR protein. | 0.492 |
| SDS54433.1 | SDS08003.1 | SAMN04488570_2120 | SAMN04488570_1083 | Hemerythrin HHE cation binding domain-containing protein. | Nucleotide-binding universal stress protein, UspA family. | 0.478 |
| SDS54433.1 | SDS13561.1 | SAMN04488570_2120 | SAMN04488570_1209 | Hemerythrin HHE cation binding domain-containing protein. | YjbR protein. | 0.451 |
| def-2 | SDS13513.1 | SAMN04488570_1211 | SAMN04488570_1208 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.911 |
| def-2 | SDS13561.1 | SAMN04488570_1211 | SAMN04488570_1209 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | YjbR protein. | 0.773 |
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