STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_0010PFAM: YdjC family protein; KEGG: dsa:Desal_0029 YdjC family protein. (284 aa)    
Predicted Functional Partners:
Daes_0012
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: tte:TTE0770 NCAIR mutase (PurE)-related proteins.
       0.601
Daes_0011
PFAM: asparagine synthase; KEGG: mta:Moth_2511 hypothetical protein.
       0.563
Daes_0009
Regulatory protein MarR; KEGG: rlt:Rleg2_4102 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
       0.539
Daes_0013
PFAM: protein of unknown function DUF111; KEGG: dol:Dole_2215 hypothetical protein.
       0.479
Daes_0014
PFAM: Protein of unknown function DUF3431; KEGG: dma:DMR_23640 hypothetical protein.
       0.457
Daes_0008
PFAM: Methyltransferase type 11; KEGG: dsa:Desal_0040 methyltransferase type 12.
       0.426
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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