STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_0020PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: tfu:Tfu_0009 putative transferase. (291 aa)    
Predicted Functional Partners:
kdsA
KEGG: dsa:Desal_2260 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA.
 
  
 0.955
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
  
 0.953
Daes_1989
PFAM: acylneuraminate cytidylyltransferase; KEGG: pph:Ppha_0534 acylneuraminate cytidylyltransferase.
 
   0.942
Daes_0098
PFAM: acylneuraminate cytidylyltransferase; KEGG: mae:Maeo_0417 acylneuraminate cytidylyltransferase.
 
   0.925
Daes_1471
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: dsa:Desal_2259 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.
  
  
 
0.923
Daes_1985
SMART: SAF domain protein; TIGRFAM: N-acetylneuraminate synthase; KEGG: cco:CCC13826_2303 general stress protein 14 (GSP14); PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein.
   
 0.897
Daes_1206
KpsF/GutQ family protein; SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: dba:Dbac_3213 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; Belongs to the SIS family. GutQ/KpsF subfamily.
 
  
 0.840
Daes_0105
PFAM: acylneuraminate cytidylyltransferase; KEGG: mbu:Mbur_1594 acylneuraminate cytidylyltransferase.
 
   0.800
Daes_2970
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: dvm:DvMF_1832 N-acylneuraminate-9-phosphate synthase; SMART: SAF domain protein.
   
 0.768
Daes_1472
PFAM: protein of unknown function DUF1239; KEGG: dsa:Desal_2258 protein of unknown function DUF1239.
  
  
 0.590
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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