STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_0254PFAM: glycosyl transferase family 2; KEGG: dvm:DvMF_1952 glycosyl transferase family 2. (547 aa)    
Predicted Functional Partners:
Daes_2610
KEGG: bhy:BHWA1_00475 hypothetical protein.
 
  
 0.694
Daes_2839
KEGG: dvm:DvMF_0206 hypothetical protein.
 
     0.641
Daes_2106
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: drt:Dret_0269 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase.
  
  
 0.606
Daes_0243
KEGG: dsa:Desal_3428 putative transcriptional regulator, MerR family.
  
     0.594
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.466
Daes_1874
SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: dsa:Desal_2729 PBS lyase heat domain protein repeat-containing protein.
  
     0.461
Daes_1039
KEGG: dde:Dde_0264 hypothetical protein.
  
     0.459
Daes_2130
KEGG: dsa:Desal_1020 anti-sigma-28 factor FlgM family protein; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein.
  
     0.459
Daes_0936
Hypothetical protein; KEGG: amu:Amuc_0623 glycosyl hydrolase BNR repeat-containing protein.
  
     0.452
Daes_0977
KEGG: dsa:Desal_3029 hypothetical protein.
 
     0.442
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.