STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_0574PFAM: MotA/TolQ/ExbB proton channel; Cell-wall binding lipoprotein YkyA, putative; KEGG: dsa:Desal_2082 MotA/TolQ/ExbB proton channel. (475 aa)    
Predicted Functional Partners:
Daes_0576
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dde:Dde_2155 biopolymer transport protein (ExbD2).
 
 
 0.993
Daes_0577
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.987
Daes_0573
PFAM: Uncharacterised conserved protein UCP028069; KEGG: dsa:Desal_2081 hypothetical protein.
 
  
 0.956
Daes_0578
KEGG: dsa:Desal_2086 tetratricopeptide domain protein.
 
     0.942
Daes_1419
Protein TolR; KEGG: dsa:Desal_2480 protein TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.917
Daes_0575
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsa:Desal_2083 MotA/TolQ/ExbB proton channel.
 
    
0.849
Daes_1420
Protein TolA; KEGG: dsa:Desal_2479 protein TolA; TIGRFAM: protein TolA; TonB family protein; PFAM: TonB domain.
  
 
 0.806
Daes_0568
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdl:Sdel_1574 TonB-dependent receptor.
 
  
 0.773
Daes_0583
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: dat:HRM2_08940 TonB-dependent outer-membrane uptake protein.
 
  
 0.728
Daes_0570
KEGG: pgi:PG1179 hypothetical protein.
 
     0.712
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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