STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_0803Hypothetical protein; KEGG: dba:Dbac_0249 cytochrome c family protein. (182 aa)    
Predicted Functional Partners:
Daes_0804
TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; KEGG: dsa:Desal_0604 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein.
 
    0.817
Daes_2153
KEGG: dsa:Desal_2983 tetratricopeptide domain protein.
  
   
 0.689
Daes_2280
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dsa:Desal_0977 TPR repeat-containing protein.
  
     0.624
Daes_0733
SMART: Tetratricopeptide repeat; KEGG: dsa:Desal_0270 TPR repeat-containing protein.
  
     0.609
Daes_3040
KEGG: dsa:Desal_3353 CgeB family protein.
  
     0.607
Daes_2311
KEGG: dma:DMR_32870 hypothetical protein.
  
     0.606
Daes_0363
KEGG: dsa:Desal_3254 hypothetical protein.
  
     0.598
Daes_2831
Hypothetical protein; KEGG: dsa:Desal_0800 TPR repeat-containing protein.
  
   
 0.597
purL
Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in [...]
     
 0.589
Daes_2611
KEGG: dvm:DvMF_3199 hypothetical protein.
  
     0.582
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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